MiST is a rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller. It provides tools to download, index, and query schemes, as well as to construct (cg)MLST-based phylogenies.

The documentation is available on the Wiki.

Create an issue to report bugs, propose new functions or ask for help.

Bogaerts, B., Roosens, N.H.C. & Vanneste, K. MiST: rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele calling from draft genomes. BMC Genomics (2025). https://doi.org/10.1186/s12864-025-12324-z