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Pull requests: biopython/biopython

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Pull requests list

Fix obsolete move logic in PDBList.update_pdb for mmCIF/mmtf and assemblies
#5256 opened Jul 3, 2026 by SID-6921 Loading…
7
Update KEGG API
#5255 opened Jul 1, 2026 by synqa Loading…
3 tasks done
1
7
Bump actions/cache from 5 to 6 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#5253 opened Jun 29, 2026 by dependabot Bot Loading…
Fix 5235 - Endian issue with binary CIF
#5252 opened Jun 27, 2026 by Will-Tyler Contributor Loading…
3 tasks done
1
6
Feat: Add optional title parameter to plotting function
#5251 opened Jun 25, 2026 by dawnandrew100 Loading…
3 tasks done
1
7
Atom comparison of element, pqr_charge, and radius was broken
#5249 opened Jun 25, 2026 by peterjc Member Loading…
3 tasks done
1
Calculate TLEN when writing SAM alignments
#5244 opened Jun 23, 2026 by GeneratedScript-RL Contributor Loading…
3 tasks done
1
7
Bump actions/checkout from 6 to 7 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#5242 opened Jun 22, 2026 by dependabot Bot Loading…
First draft of no-AI policy.
#5241 opened Jun 22, 2026 by peterjc Member Loading…
3 tasks done
11
Add docstrings to SequenceDataAbstractBaseClass magic methods
#5240 opened Jun 19, 2026 by LuciPengu Loading…
3 tasks done
7
Add PDB and PAE downloads to Bio.PDB.alphafold_db
#5236 opened Jun 15, 2026 by jam-sudo Loading…
3 tasks done
3
Bump codecov/codecov-action from 6 to 7 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#5234 opened Jun 8, 2026 by dependabot Bot Loading…
1
Add pymysql driver support to BioSQL
#5233 opened Jun 5, 2026 by yiyabo Loading…
3 tasks done
1
8
fix(PDB): extend obsolete file handling to mmCIF and XML formats
#5231 opened Jun 2, 2026 by mayank-dev-15 Loading…
1
4
Feature/alphafold proteome bulk download
#5221 opened May 27, 2026 by gabufle Loading…
3 tasks done
1
Percent to f-strings using flynt v1.0.6
#5219 opened May 22, 2026 by peterjc Member Loading…
3 tasks done
1
SeqUtils: Improve GC123 robustness and modernize SearchIO repr
#5214 opened May 16, 2026 by Amnotreallyfunny Loading…
1
Tests: add tests for six_frame_translations and nt_search in Bio.SeqUtils
#5211 opened May 11, 2026 by amitsjc Loading…
1
Add fasta-ncbi format for NCBI FASTA header dbxref parsing
#5201 opened Apr 17, 2026 by mmokrejs Loading…
2
Add 18 pKa scales for isoelectric point calculation
#5200 opened Apr 17, 2026 by mmokrejs Loading…
17
Draw trees in vertical, horizontal and circular orientations
#5199 opened Apr 17, 2026 by mmokrejs Loading…
7
PERF: Optimise SequentialSeqFileRandomAccess index construction
#5198 opened Apr 17, 2026 by mmokrejs Loading…
3 tasks done
1
Support minimal MEME files without Background letter frequencies line.
#5194 opened Apr 14, 2026 by ghuls Contributor Loading…
3 tasks done
4
ENH: Native IUPAC resolution for partial gap codons in translate
#5186 opened Apr 4, 2026 by mmokrejs Loading…
27
ENH: Add high-performance HeaderParsers to sequential format IO modules
#5185 opened Apr 3, 2026 by mmokrejs Loading…
3 tasks done
7
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