Skip to content

@Dfam-consortium Dfam Consortium

Change the repository type filter

All

    Repositories list

    24 repositories

    • dfam-curator

      Public
      Rust
      •
      Other
      •0•0•0•0•Updated Jul 16, 2026Jul 16, 2026

    • Dfam-Portal

      Public
      Angular website for Dfam resource
      TypeScript
      •
      Creative Commons Zero v1.0 Universal
      •1•1•0•0•Updated Jun 25, 2026Jun 25, 2026

    • TETools

      Public
      Dfam Transposable Element Tools Docker container.
      Perl
      •
      Creative Commons Zero v1.0 Universal
      •16•105•2•0•Updated Jun 11, 2026Jun 11, 2026

    • RepeatModeler

      Public
      De-Novo Repeat Discovery Tool
      Perl
      •
      Other
      •27•243•23•2•Updated Jun 11, 2026Jun 11, 2026

    • RepeatMasker

      Public
      RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
      Perl
      •
      Other
      •50•311•23•3•Updated Jun 4, 2026Jun 4, 2026

    • FamDB

      Public
      FamDB file format library and utilities
      Python
      •4•44•1•1•Updated Jun 1, 2026Jun 1, 2026

    • Smitten

      Public
      A format for sequence identifiers and reference parsing implementations
      Perl
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated May 20, 2026May 20, 2026

    • RECON

      Public
      An extended version of RECON a tool to cluster self-alignments into repetitive element families
      C
      •
      GNU General Public License v2.0
      •2•2•0•0•Updated May 4, 2026May 4, 2026

    • RmAlign

      Public
      Python
      •0•0•0•0•Updated Mar 23, 2026Mar 23, 2026

    • RepeatMasker_Nextflow

      Public
      Nextflow script for running RepeatMasker on a cluster
      Perl
      •1•6•1•0•Updated Feb 12, 2026Feb 12, 2026

    • TE_Idx

      Public
      Rust
      •
      MIT License
      •0•0•0•0•Updated Jan 22, 2026Jan 22, 2026

    • DfamTEBrowser

      Public
      Transposable Element Family Genome Browser
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Aug 1, 2025Aug 1, 2025

    • dfam_igv.js

      Public
      Embeddable genomic visualization component based on the Integrative Genomics Viewer with Dfam Extensions
      HTML
      •
      MIT License
      •242•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • RepeatAfterMe

      Public
      A package for the extension of repetitive DNA sequences
      C
      •
      Creative Commons Zero v1.0 Universal
      •0•3•2•0•Updated Jul 21, 2025Jul 21, 2025

    • DisCoord

      Public
      A tool for validating and fixing sequence coordinates in FASTA or Stockholm files
      Rust
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • AlignmentSummaryViewer

      Public
      Multiple sequence alignment visualization component
      HTML
      •0•7•0•0•Updated Dec 12, 2024Dec 12, 2024

    • RepeatScout

      Public
      An algorithm for the de novo identification of repeat families.
      C
      •
      Creative Commons Zero v1.0 Universal
      •0•3•0•0•Updated Nov 26, 2024Nov 26, 2024

    • tss_prefilter

      Public
      Tensor Slide Sketch Alignment Prefilter
      Rust
      •0•1•0•0•Updated Sep 16, 2024Sep 16, 2024

    • polyA

      Public
      Automatically Adjudicate Any And All Arbitrary Annotations, Astutely Adjoin Abutting Alignments, And Also Amputate Anything Amiss (AAAAAAAAAAAAAAAA)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Dec 9, 2022Dec 9, 2022

    • dfam-boilerplate

      Public
      Boilerplate, templates and standards for various languages and platforms utilized by Dfam
      Python
      •0•0•0•0•Updated Aug 30, 2022Aug 30, 2022

    • TEForwardEvolve

      Public
      Perl
      •0•1•0•0•Updated Nov 3, 2021Nov 3, 2021

    • Karyotype

      Public
      Dfam Karyotype Visualization
      HTML
      •0•0•0•0•Updated Feb 27, 2019Feb 27, 2019

    • HMM_Logos

      Public
      A Dfam specific encapsulation of the Bio-HMM-Logo project by Jody Clements
      C
      •0•0•0•0•Updated Feb 19, 2019Feb 19, 2019

    • Dfam-js

      Public
      Dfam/Dfam_consensus javascript library
      JavaScript
      •0•1•0•0•Updated Dec 14, 2018Dec 14, 2018
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.